Small RNA

Small RNA (sRNA) are polymeric RNA molecules that are less than 200 nucleotides in length, and are usually non-coding.[1] RNA silencing is often a function of these molecules, with the most common and well-studied example being RNA interference (RNAi), in which endogenously (from within the organism) expressed microRNA (miRNA) or endogenously/exogenously (from outside the organism) derived small interfering RNA (siRNA) induces the degradation of complementary messenger RNA.[2] Other classes of small RNA have been identified, including piwi-interacting RNA (piRNA) and its subspecies repeat associated small interfering RNA (rasiRNA).[3] Small RNA "is unable to induce RNAi alone, and to accomplish the task it must form the core of the RNA–protein complex termed the RNA-induced silencing complex (RISC), specifically with Argonaute protein".[4]: 366 

A simplified overview of RNAi.

Small RNA have been detected or sequenced using a range of techniques, including directly by MicroRNA sequencing on several sequencing platforms,[5][6][7] or indirectly through genome sequencing and analysis.[8] Identification of miRNAs has been evaluated in detecting human disease, such as breast cancer.[6] Peripheral blood mononuclear cell (PBMC) miRNA expression has been studied as potential biomarker for different neurological disorders such as Parkinson's disease,[9] Multiple sclerosis.[10] Evaluating small RNA is useful for certain kinds of study because its molecules "do not need to be fragmented prior to library preparation".[4]: 162 

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  2. ^ Billi, Allison C.; Fischer, Sylvia E. J.; Kim, John K. (2018), "Endogenous RNAi pathways in C. elegans", WormBook: The Online Review of C. elegans Biology [Internet], WormBook, pp. 1–49, doi:10.1895/wormbook.1.170.1, PMC 4781133, PMID 24816713, retrieved 2025-05-05
  3. ^ Gunawardane LS, Saito K, Nishida KM, Miyoshi K, Kawamura Y, Nagami T, et al. (March 2007). "A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila". Science. 315 (5818): 1587–90. doi:10.1126/science.1140494. PMID 17322028. S2CID 11513777.
  4. ^ a b Meyers RA (2012). Epigenetic Regulation and Epigenomics. Wiley-Blackwell. ISBN 978-3-527-66861-8.
  5. ^ Lu C, Tej SS, Luo S, Haudenschild CD, Meyers BC, Green PJ (September 2005). "Elucidation of the small RNA component of the transcriptome". Science. 309 (5740): 1567–9. Bibcode:2005Sci...309.1567L. doi:10.1126/science.1114112. PMID 16141074. S2CID 1651848.
  6. ^ a b Wu Q, Lu Z, Li H, Lu J, Guo L, Ge Q (2011). "Next-generation sequencing of microRNAs for breast cancer detection". Journal of Biomedicine & Biotechnology. 2011: 597145. doi:10.1155/2011/597145. PMC 3118289. PMID 21716661.
  7. ^ Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, et al. (December 2006). "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans". Cell. 127 (6): 1193–207. doi:10.1016/j.cell.2006.10.040. PMID 17174894. S2CID 16838469.
  8. ^ Witten D, Tibshirani R, Gu SG, Fire A, Lui WO (May 2010). "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls". BMC Biology. 8 (1): 58. doi:10.1186/1741-7007-8-58. PMC 2880020. PMID 20459774.
  9. ^ Gui Y, Liu H, Zhang L, Lv W, Hu X (November 2015). "Altered microRNA profiles in cerebrospinal fluid exosome in Parkinson disease and Alzheimer disease". Oncotarget. 6 (35): 37043–53. doi:10.18632/oncotarget.6158. PMC 4741914. PMID 26497684.
  10. ^ Keller A, Leidinger P, Lange J, Borries A, Schroers H, Scheffler M, et al. (October 2009). "Multiple sclerosis: microRNA expression profiles accurately differentiate patients with relapsing-remitting disease from healthy controls". PLOS ONE. 4 (10): e7440. Bibcode:2009PLoSO...4.7440K. doi:10.1371/journal.pone.0007440. PMC 2757919. PMID 19823682.

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